rs16802620 SNP Detail

Summary

• ID
  rs16802620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4090994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                  TNAGA NGCCCAGGCA GGGCCTTCNC GTAGTCATTC TTACCATTCT
  CCTGCCAGGG AGACACCCAA AGATGTACCA TCCTCCCACT GTCACAGTGC CCTGGGCACT
  GGACTCCTGC TGCCCTGTAA TGAATTCCAG ATATACCCCC CCCCCCCAGG GACATGGNCT
  ACCACTACCT ACTTCCTGGG CTACCCTACC CCCCAGATTC AGGCTCACAT AGTTTCTGTA
  R
  ATCATGGTGC CATATTTGCC GCGAAGGTCC TCNACCCCAT CATTCACCAT ATCCACCTGG
  GCGGCCTCCC TCTGGTTTTT CCCATAAAGC CCTGCGGGTT GGGAGAGACA GCATGACTGA
  TCCCTGATTT CCTCAGGTAT GTGGCT                                     
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	NZW/Lac	SM/J	SPRET/EiJ
ss24757336	Gstp1_JC6077_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	NZW/Lac	SM/J	SPRET/EiJ
rs16802620					SNP	G	G	G	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4090994 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357950	regulatory region 357950	1794 bp distal
Rr363269	regulatory region 363269	206 bp proximal
Tssr157438	transcription start site region 157438	1236 bp downstream
Tssr157439	transcription start site region 157439	1249 bp downstream