rs16802927 SNP Detail

Summary

• ID
  rs16802927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120273323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGGCA ACATGCAGAG
  ATTCACACGA ATCTCAAATC ACACAAAATA TGCACTTCAA AGGCAGAGAC CTGTGCTTTT
  GTTGTTGTTT TTTGTTTGCT TTTGAGTAAG TGTAGGTCTG GTGAGATGGT TTAGTAATTA
  AGATCATGGA CTGTTTTTGC AGGGAACCTG ATTTCAGTTT CCAGCACCCA TGTCAGGCAG
  Y
  TCACAGTCAC CAATAACTCT ATAATCAAAA CATATTTTAG AGAGCCGGGC GTGGTGGCGC
  ACACCTTTAA TCCCAGCACT CGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TCGAGGCCAG
  CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTGCA CAGAGAAACC CTGTCTCGGA
  AAAAAACAAA AACAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24757713	Mbtps1_JC8880_9	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T		T	T	T	C	T	T			T		T		T	T		T		T	C
ss60669535	NES16248928	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		T		T		T		C	T		T	T		C		T			T		C			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16802927					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60669535	NES16248928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120273323 () rs orientation: forward

Symbol	Name	Function Class
Mbtps1	membrane-bound transcription factor peptidase, site 1	within coordinates
Rr382729	regulatory region 382729	within coordinates
Rr671157	regulatory region 671157	501 bp proximal
Tssr83126	transcription start site region 83126	1501 bp upstream