rs16806521 SNP Detail

Summary

• ID
  rs16806521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCTGG GTTGTGTATG
  GGGTGACTTC CTGGGGGTAT GGATGTGGAG TCAAAGACAC TCCTGGAGTT TATACCAGAG
  TCCCCGCCTT TGTACCTTGG ATAAAAAGTG TCACCAGTCT GTAACTTATG GAAAGCTCAA
  GAAAATAGTA AAACAGTAAC CATTCAGTCT TCATACTTGG CACCATGCCA GAAATGACAA
  R
  CCTGCGATTC CTTTGAATTT GAGAGAACCC AGTAGTTCAG GGGTACAGGT CTTATCCTTG
  CCTATTACAA TTTTTATGTA AGGTGAAATT CTAGCAAATC TTAGTTTTAA TTTTTAAATC
  TACAAAATTT GGGCTAGGAA CCTTGATTAG GTGCCCACAT TTAACCTTTT TGATCTTACC
  TACACTAAGA CCAGCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24761393	Prss12_JC9396_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16806521					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1334 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	7 bp downstream
Rr397991	regulatory region 397991	129 bp upstream
Rr584523	regulatory region 584523	294 bp proximal
Rr584524	regulatory region 584524	429 bp proximal
Rr584525	regulatory region 584525	1770 bp proximal
Snhg8	small nucleolar RNA host gene 8	948 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1333 bp downstream
Tssr31551	transcription start site region 31551	1946 bp upstream
Tssr31552	transcription start site region 31552	1984 bp upstream
Tssr35502	transcription start site region 35502	1726 bp downstream