rs16806522 SNP Detail

Summary

• ID
  rs16806522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGTGGA GTCAAAGACA
  CTCCTGGAGT TTATACCAGA GTCCCCGCCT TTGTACCTTG GATAAAAAGT GTCACCAGTC
  TGTAACTTAT GGAAAGCTCA AGAAAATAGT AAAACAGTAA CCATTCAGTC TTCATACTTG
  GCACCATGCC AGAAATGACA AGCCTGCGAT TCCTTTGAAT TTGAGAGAAC CCAGTAGTTC
  R
  GGGGTACAGG TCTTATCCTT GCCTATTACA ATTTTTATGT AAGGTGAAAT TCTAGCAAAT
  CTTAGTTTTA ATTTTTAAAT CTACAAAATT TGGGCTAGGA ACCTTGATTA GGTGCCCACA
  TTTAACCTTT TTGATCTTAC CTACACTAAG ACCAGCACAT CATTTTCTTA AGTTCAAATC
  TTCACTATCA AAATCATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
ss24761394	Prss12_JC9396_2	ROCHEBIO	RPAMM	f	SNP	A			G	G	A	A	G	G		A	G	A	G	A	A			A	G		A	G	A		A		G
ss45557133	mCV24054463	ABI	CRAMUS_MOUSE	f	SNP			A		G								A		A
ss60445543	NES15941765	PERLEGEN	MM_PANEL2	f	SNP		A			G			G		A		G		G	A		A				G				A		G		G
ss135766522	ENSMUSSNP912300	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G										A
ss320920376	CHEV_3_123209561	CHEVERUD	SCREENING_POP	f	SNP																		A										G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
rs16806522					SNP	A	A	A	G	G	A	A	G	G	A	A	G	A	G	A	A	A	A	A	G	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445543	NES15941765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1295 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	46 bp downstream
Rr397991	regulatory region 397991	90 bp upstream
Rr584523	regulatory region 584523	255 bp proximal
Rr584524	regulatory region 584524	390 bp proximal
Rr584525	regulatory region 584525	1731 bp proximal
Snhg8	small nucleolar RNA host gene 8	909 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1294 bp downstream
Tssr31551	transcription start site region 31551	1907 bp upstream
Tssr31552	transcription start site region 31552	1945 bp upstream
Tssr35502	transcription start site region 35502	1687 bp downstream