rs16806524 SNP Detail

Summary

• ID
  rs16806524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC TTAGTTTTAA TTTTTAAATC
  Y
  ACAAAATTTG GGCTAGGAAC CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24761396	Prss12_JC9396_4	ROCHEBIO	RPAMM	f	SNP	T		C	C	T	T	C	C	T	C	T	C	T	T		T	C	T	C	T	T	C
ss135766525	ENSMUSSNP1692688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C									T
ss320920377	CHEV_3_123209643	CHEVERUD	SCREENING_POP	f	SNP															T							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16806524					SNP	T	T	C	C	T	T	C	C	T	C	T	C	T	T	T	T	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1213 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	128 bp downstream
Rr397991	regulatory region 397991	8 bp upstream
Rr584523	regulatory region 584523	173 bp proximal
Rr584524	regulatory region 584524	308 bp proximal
Rr584525	regulatory region 584525	1649 bp proximal
Snhg8	small nucleolar RNA host gene 8	827 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1212 bp downstream
Tssr31551	transcription start site region 31551	1825 bp upstream
Tssr31552	transcription start site region 31552	1863 bp upstream
Tssr35502	transcription start site region 35502	1605 bp downstream