rs16806529 SNP Detail

Summary

• ID
  rs16806529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAAATG ACAAGCCTGC
  GATTCCTTTG AATTTGAGAG AACCCAGTAG TTCAGGGGTA CAGGTCTTAT CCTTGCCTAT
  TACAATTTTT ATGTAAGGTG AAATTCTAGC AAATCTTAGT TTTAATTTTT AAATCTACAA
  AATTTGGGCT AGGAACCTTG ATTAGGTGCC CACATTTAAC CTTTTTGATC TTACCTACAC
  Y
  AAGACCAGCA CATCATTTTC TTAAGTTCAA ATCTTCACTA TCAAAATCAT TTCTCTAGAA
  CAGTAGGCAG ATGTCAAACT TGAATTCTGC CTTTTGAACC ATGAAAAAGT ACGCCATCTA
  CTGGTACCTT CAAGTAAGTT CAGATCTCCT GAGACTAACC TGACAAATGT TTTAAAGAGG
  CTCTCCTTAT GTACCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
ss24761401	Prss12_JC9396_9	ROCHEBIO	RPAMM	f	SNP	T		C	C	T	T	C	C	T	C	T	T	T	T			T	C		T	C	T		T		C
ss60445540	NES15941769	PERLEGEN	MM_PANEL2	f	SNP				C			C			C		T	T		T				C				T		C		T
ss135766537	ENSMUSSNP5832736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C									T
ss320920381	CHEV_3_123209708	CHEVERUD	SCREENING_POP	f	SNP																T										C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
rs16806529					SNP	T	T	C	C	T	T	C	C	T	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445540	NES15941769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1148 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	193 bp downstream
Rr397991	regulatory region 397991	within coordinates
Rr584523	regulatory region 584523	108 bp proximal
Rr584524	regulatory region 584524	243 bp proximal
Rr584525	regulatory region 584525	1584 bp proximal
Snhg8	small nucleolar RNA host gene 8	762 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1147 bp downstream
Tssr31551	transcription start site region 31551	1760 bp upstream
Tssr31552	transcription start site region 31552	1798 bp upstream
Tssr35502	transcription start site region 35502	1540 bp downstream