rs16806543 SNP Detail

Summary

• ID
  rs16806543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCTAGC AAATCTTAGT
  TTTAATTTTT AAATCTACAA AATTTGGGCT AGGAACCTTG ATTAGGTGCC CACATTTAAC
  CTTTTTGATC TTACCTACAC TAAGACCAGC ACATCATTTT CTTAAGTTCA AATCTTCACT
  ATCAAAATCA TTTCTCTAGA ACAGTAGGCA GATGTCAAAC TTGAATTCTG CCTTTTGAAC
  Y
  ATGAAAAAGT ACGCCATCTA CTGGTACCTT CAAGTAAGTT CAGATCTCCT GAGACTAACC
  TGACAAATGT TTTAAAGAGG CTCTCCTTAT GTACCAGAAA GCCTAACACA TGAAATGGCA
  AGCAGTTAAG AGGCCATACA AATTACTGAC CACTTGTGGA ACCATGACCT TACAGCAGCC
  CTTTTTAAAT AGGAATGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
ss24761415	Prss12_JC9396_23	ROCHEBIO	RPAMM	f	SNP	C			T	T	C	C	T	T		C	T	C	C	C	C			C	T		C		T	C		C		T
ss60445539	NES15941770	PERLEGEN	MM_PANEL2	f	SNP		C			T			T		C		T		C	C		C				T		C			C		T		C
ss135766540	ENSMUSSNP278160	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T										C
ss320920384	CHEV_3_123209808	CHEVERUD	SCREENING_POP	f	SNP																		C											T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
rs16806543					SNP	C	C	C	T	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445539	NES15941770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1048 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	293 bp downstream
Rr397991	regulatory region 397991	within coordinates
Rr584523	regulatory region 584523	8 bp proximal
Rr584524	regulatory region 584524	143 bp proximal
Rr584525	regulatory region 584525	1484 bp proximal
Snhg8	small nucleolar RNA host gene 8	662 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1047 bp downstream
Tssr31551	transcription start site region 31551	1660 bp upstream
Tssr31552	transcription start site region 31552	1698 bp upstream
Tssr35502	transcription start site region 35502	1440 bp downstream