rs16806544 SNP Detail

Summary

• ID
  rs16806544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGTTTT AATTTTTAAA
  TCTACAAAAT TTGGGCTAGG AACCTTGATT AGGTGCCCAC ATTTAACCTT TTTGATCTTA
  CCTACACTAA GACCAGCACA TCATTTTCTT AAGTTCAAAT CTTCACTATC AAAATCATTT
  CTCTAGAACA GTAGGCAGAT GTCAAACTTG AATTCTGCCT TTTGAACCAT GAAAAAGTAC
  R
  CCATCTACTG GTACCTTCAA GTAAGTTCAG ATCTCCTGAG ACTAACCTGA CAAATGTTTT
  AAAGAGGCTC TCCTTATGTA CCAGAAAGCC TAACACATGA AATGGCAAGC AGTTAAGAGG
  CCATACAAAT TACTGACCAC TTGTGGAACC ATGACCTTAC AGCAGCCCTT TTTAAATAGG
  AATGAAGGCC CAGAGACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
ss24761416	Prss12_JC9396_24	ROCHEBIO	RPAMM	f	SNP	G		A	A	G	G	A	A		G	A	G	G	G	G		G	A		G		A	G		G		A
ss60445538	NES15941771	PERLEGEN	MM_PANEL2	f	SNP				A	A		A		G		A		G	G		G			A		G			G		A		G
ss135766543	ENSMUSSNP7002270	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A										G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
rs16806544					SNP	G	G	A	A	?	G	A	A	G	G	A	G	G	G	G	G	G	A	A	G	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445538	NES15941771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1035 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	306 bp downstream
Rr397991	regulatory region 397991	within coordinates
Rr584523	regulatory region 584523	within coordinates
Rr584524	regulatory region 584524	130 bp proximal
Rr584525	regulatory region 584525	1471 bp proximal
Snhg8	small nucleolar RNA host gene 8	649 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1034 bp downstream
Tssr31551	transcription start site region 31551	1647 bp upstream
Tssr31552	transcription start site region 31552	1685 bp upstream
Tssr35502	transcription start site region 35502	1427 bp downstream