rs16807019 SNP Detail

Summary

• ID
  rs16807019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                         CTGA GTTCATGCTA AGATGGACAG
  ACTGGAGAGG AAGACGGATG TAGAATGAGA GGATGCTGCA GGATTCCAGA GCCCCAGCTT
  Y
  TNTGATGCGT GTCAAAGCAC CCCCGCACGC CCCATGATGA AACTCCGCCC TCTCAGACTT
  CGGACCCTCA GACTTCACTC CTTNGTNTNC CCNGAAGACT CCTCCCNCTT AGGTCATNTT
  CCNTCTTGGG NTCTGCTCCC AGGCAAAACA ATTATAATAA AACCACGCCC CTTCAAAAAA
  AAAAAAAAAC CAACTGAGAC ACACCTCCTT TGCTCNTGGC CCATGCTACA CCATTTTAAT
  NACCATTCTC TGGAATAGCC CAACCCTCAG GATCACCGCC AANAAATATC TTTCCCTAAA
  TAGCTGCTGC ANCCCTTCAT ATTTCACCCA ATAGGATTTC TTCTCTGGAC TCCATCCCAT
  TTGTCCCCAC TCCTAGTCAC NCTAGGACTG CGCCTATTCT GCGCACGNGG ACCTCAAACA
  GCTCG                                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BUB	C3H/HeJ	MRL/MpJ
ss24761894	Prss19_JC9447_1	ROCHEBIO	RPAMM	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BUB	C3H/HeJ	MRL/MpJ
rs16807019					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	381 bp proximal
Cpgi18946	CpG island 18946	1110 bp proximal
Klk8	kallikrein related-peptidase 8	1353 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	182 bp proximal
Rr646022	regulatory region 646022	1250 bp proximal
Rr646023	regulatory region 646023	1364 bp proximal
Rr646024	regulatory region 646024	1470 bp proximal
Tssr66051	transcription start site region 66051	1320 bp upstream
Tssr66052	transcription start site region 66052	1343 bp upstream
Tssr66053	transcription start site region 66053	1799 bp upstream
Tssr72173	transcription start site region 72173	1283 bp downstream