rs16807020 SNP Detail

Summary

• ID
  rs16807020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                       CTGAGT TCATGCTAAG ATGGACAGAC
  TGGAGAGGAA GACGGATGTA GAATGAGAGG ATGCTGCAGG ATTCCAGAGC CCCAGCTTNT
  Y
  TGATGCGTGT CAAAGCACCC CCGCACGCCC CATGATGAAA CTCCGCCCTC TCAGACTTCG
  GACCCTCAGA CTTCACTCCT TNGTNTNCCC NGAAGACTCC TCCCNCTTAG GTCATNTTCC
  NTCTTGGGNT CTGCTCCCAG GCAAAACAAT TATAATAAAA CCACGCCCCT TCAAAAAAAA
  AAAAAAACCA ACTGAGACAC ACCTCCTTTG CTCNTGGCCC ATGCTACACC ATTTTAATNA
  CCATTCTCTG GAATAGCCCA ACCCTCAGGA TCACCGCCAA NAAATATCTT TCCCTAAATA
  GCTGCTGCAN CCCTTCATAT TTCACCCAAT AGGATTTCTT CTCTGGACTC CATCCCATTT
  GTCCCCACTC CTAGTCACNC TAGGACTGCG CCTATTCTGC GCACGNGGAC CTCAAACAGC
  TCG                                                              
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	LP/J	MRL/MpJ	PERA
ss24761895	Prss19_JC9447_2	ROCHEBIO	RPAMM	f	SNP	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	LP/J	MRL/MpJ	PERA
rs16807020					SNP	C	T	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	379 bp proximal
Cpgi18946	CpG island 18946	1108 bp proximal
Klk8	kallikrein related-peptidase 8	1351 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	180 bp proximal
Rr646022	regulatory region 646022	1248 bp proximal
Rr646023	regulatory region 646023	1362 bp proximal
Rr646024	regulatory region 646024	1468 bp proximal
Tssr66051	transcription start site region 66051	1318 bp upstream
Tssr66052	transcription start site region 66052	1341 bp upstream
Tssr66053	transcription start site region 66053	1797 bp upstream
Tssr72173	transcription start site region 72173	1281 bp downstream