rs16807021 SNP Detail

Summary

• ID
  rs16807021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTGGA TTGAAAGCAC
  CATGGAAAAA AACTGAGTTC ATGCTAAGAT GGACAGACTG GAGAGGAAGA CGGATGTAGA
  ATGAGAGGAT GCTGCAGGAT TCCAGAGCCC CAGCTTCTCT GATGCGTGTC AAAGCACCCC
  CGCACGCCCC ATGATGAAAC TCCGCCCTCT CAGACTTCGG ACCCTCAGAC TTCACTCCTT
  W
  GTCTCCCCCG AAGACTCCTC CCACTTAGGT CATCTTCCCT CTTGGGGTCT GCTCCCAGGC
  AAAACAATTA TAATAAAACC ACGCCCCTTC AAAAAAAAAA AAAAAACCAA CTGAGACACA
  CCTCCTTTGC TCCTGGCCCA TGCTACACCA TTTTAATCAC CATTCTCTGG AATAGCCCAA
  CCCTCAGGAT CACCGCCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761896	Prss19_JC9447_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807021					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	297 bp proximal
Cpgi18946	CpG island 18946	1026 bp proximal
Klk8	kallikrein related-peptidase 8	1269 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	98 bp proximal
Rr646022	regulatory region 646022	1166 bp proximal
Rr646023	regulatory region 646023	1280 bp proximal
Rr646024	regulatory region 646024	1386 bp proximal
Tssr66051	transcription start site region 66051	1236 bp upstream
Tssr66052	transcription start site region 66052	1259 bp upstream
Tssr66053	transcription start site region 66053	1715 bp upstream
Tssr72173	transcription start site region 72173	1199 bp downstream