rs16807022 SNP Detail

Summary

• ID
  rs16807022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

           C TGAGTTCATG CTAAGATGGA CAGACTGGAG AGGAAGACGG ATGTAGAATG
  AGAGGATGCT GCAGGATTCC AGAGCCCCAG CTTNTNTGAT GCGTGTCAAA GCACCCCCGC
  ACGCCCCATG ATGAAACTCC GCCCTCTCAG ACTTCGGACC CTCAGACTTC ACTCCTTNGT
  Y
  TNCCCNGAAG ACTCCTCCCN CTTAGGTCAT NTTCCNTCTT GGGNTCTGCT CCCAGGCAAA
  ACAATTATAA TAAAACCACG CCCCTTCAAA AAAAAAAAAA AACCAACTGA GACACACCTC
  CTTTGCTCNT GGCCCATGCT ACACCATTTT AATNACCATT CTCTGGAATA GCCCAACCCT
  CAGGATCACC GCCAANAAAT ATCTTTCCCT AAATAGCTGC TGCANCCCTT CATATTTCAC
  CCAATAGGAT TTCTTCTCTG GACTCCATCC CATTTGTCCC CACTCCTAGT CACNCTAGGA
  CTGCGCCTAT TCTGCGCACG NGGACCTCAA ACAGCTCG                        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SPRET/EiJ
ss24761897	Prss19_JC9447_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SPRET/EiJ
rs16807022					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	294 bp proximal
Cpgi18946	CpG island 18946	1023 bp proximal
Klk8	kallikrein related-peptidase 8	1266 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	95 bp proximal
Rr646022	regulatory region 646022	1163 bp proximal
Rr646023	regulatory region 646023	1277 bp proximal
Rr646024	regulatory region 646024	1383 bp proximal
Tssr66051	transcription start site region 66051	1233 bp upstream
Tssr66052	transcription start site region 66052	1256 bp upstream
Tssr66053	transcription start site region 66053	1712 bp upstream
Tssr72173	transcription start site region 72173	1196 bp downstream