rs16807023 SNP Detail

Summary

• ID
  rs16807023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

         CTG AGTTCATGCT AAGATGGACA GACTGGAGAG GAAGACGGAT GTAGAATGAG
  AGGATGCTGC AGGATTCCAG AGCCCCAGCT TNTNTGATGC GTGTCAAAGC ACCCCCGCAC
  GCCCCATGAT GAAACTCCGC CCTCTCAGAC TTCGGACCCT CAGACTTCAC TCCTTNGTNT
  Y
  CCCNGAAGAC TCCTCCCNCT TAGGTCATNT TCCNTCTTGG GNTCTGCTCC CAGGCAAAAC
  AATTATAATA AAACCACGCC CCTTCAAAAA AAAAAAAAAA CCAACTGAGA CACACCTCCT
  TTGCTCNTGG CCCATGCTAC ACCATTTTAA TNACCATTCT CTGGAATAGC CCAACCCTCA
  GGATCACCGC CAANAAATAT CTTTCCCTAA ATAGCTGCTG CANCCCTTCA TATTTCACCC
  AATAGGATTT CTTCTCTGGA CTCCATCCCA TTTGTCCCCA CTCCTAGTCA CNCTAGGACT
  GCGCCTATTC TGCGCACGNG GACCTCAAAC AGCTCG                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24761898	Prss19_JC9447_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16807023					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	292 bp proximal
Cpgi18946	CpG island 18946	1021 bp proximal
Klk8	kallikrein related-peptidase 8	1264 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	93 bp proximal
Rr646022	regulatory region 646022	1161 bp proximal
Rr646023	regulatory region 646023	1275 bp proximal
Rr646024	regulatory region 646024	1381 bp proximal
Tssr66051	transcription start site region 66051	1231 bp upstream
Tssr66052	transcription start site region 66052	1254 bp upstream
Tssr66053	transcription start site region 66053	1710 bp upstream
Tssr72173	transcription start site region 72173	1194 bp downstream