rs16807024 SNP Detail

Summary

• ID
  rs16807024
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                       C TGAGTTCATG
  CTAAGATGGA CAGACTGGAG AGGAAGACGG ATGTAGAATG AGAGGATGCT GCAGGATTCC
  AGAGCCCCAG CTTNTNTGAT GCGTGTCAAA GCACCCCCGC ACGCCCCATG ATGAAACTCC
  GCCCTCTCAG ACTTCGGACC CTCAGACTTC ACTCCTTNGT NTNCCCNGAA GACTCCTCCC
  M
  CTTAGGTCAT NTTCCNTCTT GGGNTCTGCT CCCAGGCAAA ACAATTATAA TAAAACCACG
  CCCCTTCAAA AAAAAAAAAA AACCAACTGA GACACACCTC CTTTGCTCNT GGCCCATGCT
  ACACCATTTT AATNACCATT CTCTGGAATA GCCCAACCCT CAGGATCACC GCCAANAAAT
  ATCTTTCCCT AAATAGCTGC TGCANCCCTT CATATTTCAC CCAATAGGAT TTCTTCTCTG
  GACTCCATCC CATTTGTCCC CACTCCTAGT CACNCTAGGA CTGCGCCTAT TCTGCGCACG
  NGGACCTCAA ACAGCTCG                                              
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	DBA/2J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss24761899	Prss19_JC9447_6	ROCHEBIO	RPAMM	f	SNP	A	C	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	DBA/2J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs16807024					SNP	A	C	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	274 bp proximal
Cpgi18946	CpG island 18946	1003 bp proximal
Klk8	kallikrein related-peptidase 8	1246 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	75 bp proximal
Rr646022	regulatory region 646022	1143 bp proximal
Rr646023	regulatory region 646023	1257 bp proximal
Rr646024	regulatory region 646024	1363 bp proximal
Tssr66051	transcription start site region 66051	1213 bp upstream
Tssr66052	transcription start site region 66052	1236 bp upstream
Tssr66053	transcription start site region 66053	1692 bp upstream
Tssr72173	transcription start site region 72173	1176 bp downstream