rs16807025 SNP Detail

Summary

• ID
  rs16807025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                           CT GAGTTCATGC TAAGATGGAC
  AGACTGGAGA GGAAGACGGA TGTAGAATGA GAGGATGCTG CAGGATTCCA GAGCCCCAGC
  TTNTNTGATG CGTGTCAAAG CACCCCCGCA CGCCCCATGA TGAAACTCCG CCCTCTCAGA
  CTTCGGACCC TCAGACTTCA CTCCTTNGTN TNCCCNGAAG ACTCCTCCCN CTTAGGTCAT
  Y
  TTCCNTCTTG GGNTCTGCTC CCAGGCAAAA CAATTATAAT AAAACCACGC CCCTTCAAAA
  AAAAAAAAAA ACCAACTGAG ACACACCTCC TTTGCTCNTG GCCCATGCTA CACCATTTTA
  ATNACCATTC TCTGGAATAG CCCAACCCTC AGGATCACCG CCAANAAATA TCTTTCCCTA
  AATAGCTGCT GCANCCCTTC ATATTTCACC CAATAGGATT TCTTCTCTGG ACTCCATCCC
  ATTTGTCCCC ACTCCTAGTC ACNCTAGGAC TGCGCCTATT CTGCGCACGN GGACCTCAAA
  CAGCTCG                                                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	C3H/HeJ	MRL/MpJ
ss24761900	Prss19_JC9447_7	ROCHEBIO	RPAMM	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	C3H/HeJ	MRL/MpJ
rs16807025					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	263 bp proximal
Cpgi18946	CpG island 18946	992 bp proximal
Klk8	kallikrein related-peptidase 8	1235 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	64 bp proximal
Rr646022	regulatory region 646022	1132 bp proximal
Rr646023	regulatory region 646023	1246 bp proximal
Rr646024	regulatory region 646024	1352 bp proximal
Tssr66051	transcription start site region 66051	1202 bp upstream
Tssr66052	transcription start site region 66052	1225 bp upstream
Tssr66053	transcription start site region 66053	1681 bp upstream
Tssr72173	transcription start site region 72173	1165 bp downstream