rs16807026 SNP Detail

Summary

• ID
  rs16807026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGCAGGA TTCCAGAGCC CCAGCTTCTC
  TGATGCGTGT CAAAGCACCC CCGCACGCCC CATGATGAAA CTCCGCCCTC TCAGACTTCG
  GACCCTCAGA CTTCACTCCT TAGTCTCCCC CGAAGACTCC TCCCACTTAG GTCATCTTCC
  Y
  TCTTGGGGTC TGCTCCCAGG CAAAACAATT ATAATAAAAC CACGCCCCTT CAAAAAAAAA
  AAAAAAACCA ACTGAGACAC ACCTCCTTTG CTCCTGGCCC ATGCTACACC ATTTTAATCA
  CCATTCTCTG GAATAGCCCA ACCCTCAGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24761901	Prss19_JC9447_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	T
ss322197850	CHEV_7_51051717	CHEVERUD	SCREENING_POP	f	SNP													C							T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16807026					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	258 bp proximal
Cpgi18946	CpG island 18946	987 bp proximal
Klk8	kallikrein related-peptidase 8	1230 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	59 bp proximal
Rr646022	regulatory region 646022	1127 bp proximal
Rr646023	regulatory region 646023	1241 bp proximal
Rr646024	regulatory region 646024	1347 bp proximal
Tssr66051	transcription start site region 66051	1197 bp upstream
Tssr66052	transcription start site region 66052	1220 bp upstream
Tssr66053	transcription start site region 66053	1676 bp upstream
Tssr72173	transcription start site region 72173	1160 bp downstream