rs16807027 SNP Detail

Summary

• ID
  rs16807027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCCCTCT TGGGGTCTGC TCCCAGGCAA AACAATTATA
  ATAAAACCAC GCCCCTTCAA AAAAAAAAAA AAAACCAACT GAGACACACC TCCTTTGCTC
  Y
  TGGCCCATGC TACACCATTT TAATCACCAT TCTCTGGAAT AGCCCAACCC TCAGGATCAC
  CGCCAAGAAA TATCTTTCCC TAAATAGCTG CTGCAACCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24761902	Prss19_JC9447_9	ROCHEBIO	RPAMM	f	SNP	C			C	C	C	C	C	C		C	C	C	T	C			C		C	T		C		C	C
ss61001489	NES16126188	PERLEGEN	MM_PANEL2	f	SNP		C			C	C		C		C		C		T		C	C		C			T		C			C
ss149084100	ENSMUSSNP5985543	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C									T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16807027					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001489	NES16126188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	164 bp proximal
Cpgi18946	CpG island 18946	893 bp proximal
Klk8	kallikrein related-peptidase 8	1136 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	1033 bp proximal
Rr646023	regulatory region 646023	1147 bp proximal
Rr646024	regulatory region 646024	1253 bp proximal
Tssr66051	transcription start site region 66051	1103 bp upstream
Tssr66052	transcription start site region 66052	1126 bp upstream
Tssr66053	transcription start site region 66053	1582 bp upstream
Tssr72173	transcription start site region 72173	1066 bp downstream