rs16807028 SNP Detail

Summary

• ID
  rs16807028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TTCATGCTAA GATGGACAGA
  CTGGAGAGGA AGACGGATGT AGAATGAGAG GATGCTGCAG GATTCCAGAG CCCCAGCTTN
  TNTGATGCGT GTCAAAGCAC CCCCGCACGC CCCATGATGA AACTCCGCCC TCTCAGACTT
  CGGACCCTCA GACTTCACTC CTTNGTNTNC CCNGAAGACT CCTCCCNCTT AGGTCATNTT
  CCNTCTTGGG NTCTGCTCCC AGGCAAAACA ATTATAATAA AACCACGCCC CTTCAAAAAA
  AAAAAAAAAC CAACTGAGAC ACACCTCCTT TGCTCNTGGC CCATGCTACA CCATTTTAAT
  Y
  ACCATTCTCT GGAATAGCCC AACCCTCAGG ATCACCGCCA ANAAATATCT TTCCCTAAAT
  AGCTGCTGCA NCCCTTCATA TTTCACCCAA TAGGATTTCT TCTCTGGACT CCATCCCATT
  TGTCCCCACT CCTAGTCACN CTAGGACTGC GCCTATTCTG CGCACGNGGA CCTCAAACAG
  CTCG                                                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761903	Prss19_JC9447_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	139 bp proximal
Cpgi18946	CpG island 18946	868 bp proximal
Klk8	kallikrein related-peptidase 8	1111 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	1008 bp proximal
Rr646023	regulatory region 646023	1122 bp proximal
Rr646024	regulatory region 646024	1228 bp proximal
Tssr66051	transcription start site region 66051	1078 bp upstream
Tssr66052	transcription start site region 66052	1101 bp upstream
Tssr66053	transcription start site region 66053	1557 bp upstream
Tssr72173	transcription start site region 72173	1041 bp downstream