rs16807029 SNP Detail

Summary

• ID
  rs16807029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                            CTGAGTT
  CATGCTAAGA TGGACAGACT GGAGAGGAAG ACGGATGTAG AATGAGAGGA TGCTGCAGGA
  TTCCAGAGCC CCAGCTTNTN TGATGCGTGT CAAAGCACCC CCGCACGCCC CATGATGAAA
  CTCCGCCCTC TCAGACTTCG GACCCTCAGA CTTCACTCCT TNGTNTNCCC NGAAGACTCC
  TCCCNCTTAG GTCATNTTCC NTCTTGGGNT CTGCTCCCAG GCAAAACAAT TATAATAAAA
  CCACGCCCCT TCAAAAAAAA AAAAAAACCA ACTGAGACAC ACCTCCTTTG CTCNTGGCCC
  ATGCTACACC ATTTTAATNA CCATTCTCTG GAATAGCCCA ACCCTCAGGA TCACCGCCAA
  R
  AAATATCTTT CCCTAAATAG CTGCTGCANC CCTTCATATT TCACCCAATA GGATTTCTTC
  TCTGGACTCC ATCCCATTTG TCCCCACTCC TAGTCACNCT AGGACTGCGC CTATTCTGCG
  CACGNGGACC TCAAACAGCT CG                                         
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss24761904	Prss19_JC9447_11	ROCHEBIO	RPAMM	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs16807029					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	97 bp proximal
Cpgi18946	CpG island 18946	826 bp proximal
Klk8	kallikrein related-peptidase 8	1069 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	966 bp proximal
Rr646023	regulatory region 646023	1080 bp proximal
Rr646024	regulatory region 646024	1186 bp proximal
Tssr66051	transcription start site region 66051	1036 bp upstream
Tssr66052	transcription start site region 66052	1059 bp upstream
Tssr66053	transcription start site region 66053	1515 bp upstream
Tssr72173	transcription start site region 72173	999 bp downstream