rs16807030 SNP Detail

Summary

• ID
  rs16807030
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                  CTGAG TTCATGCTAA GATGGACAGA CTGGAGAGGA AGACGGATGT
  AGAATGAGAG GATGCTGCAG GATTCCAGAG CCCCAGCTTN TNTGATGCGT GTCAAAGCAC
  CCCCGCACGC CCCATGATGA AACTCCGCCC TCTCAGACTT CGGACCCTCA GACTTCACTC
  CTTNGTNTNC CCNGAAGACT CCTCCCNCTT AGGTCATNTT CCNTCTTGGG NTCTGCTCCC
  AGGCAAAACA ATTATAATAA AACCACGCCC CTTCAAAAAA AAAAAAAAAC CAACTGAGAC
  ACACCTCCTT TGCTCNTGGC CCATGCTACA CCATTTTAAT NACCATTCTC TGGAATAGCC
  CAACCCTCAG GATCACCGCC AANAAATATC TTTCCCTAAA TAGCTGCTGC ANCCCTTCAT
  ATTTCACCCA ATAGGATTTC TTCTCTGGAC TCCATCCCAT TTGTCCCCAC TCCTAGTCAC
  S
  CTAGGACTGC GCCTATTCTG CGCACGNGGA CCTCAAACAG CTCG                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761906	Prss19_JC9447_13	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807030					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	within coordinates
Cpgi18946	CpG island 18946	728 bp proximal
Klk8	kallikrein related-peptidase 8	971 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	868 bp proximal
Rr646023	regulatory region 646023	982 bp proximal
Rr646024	regulatory region 646024	1088 bp proximal
Tssr66051	transcription start site region 66051	938 bp upstream
Tssr66052	transcription start site region 66052	961 bp upstream
Tssr66053	transcription start site region 66053	1417 bp upstream
Tssr72173	transcription start site region 72173	901 bp downstream