rs16807031 SNP Detail

Summary

• ID
  rs16807031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTCATA TTTCACCCAA
  TAGGATTTCT TCTCTGGACT CCATCCCATT TGTCCCCACT CCTAGTCACG CTAGGACTGC
  GCCTATTCTG CGCACGTGGA CCTCAAACAG CTCTGGGTTC TGCTCCGAGT GTGTTTTGGG
  TCTGACTCTT GACATAGGAT GATGGGAGCA TTGATCTCTC TAGAGCCCCC AGGTGAATCA
  R
  AATAAACCAT AGGAACGATC ACTTCCTGTC GCCTGTAATG TGGGATACAG GGTGCGCACA
  GGTTGGGAGG AAAGGGTAAA TGAACGAACC TGCTCCGGCC GAACCTCTGC AACCTTAACA
  ACAAGCTTAT TGCAGCACCT TGGGACTTCA GCCAGGGCTG GTCCCGCCGC CCTGGGAGGA
  AGGGGAAACC AGGTTACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761907	Prss19_JC9448_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807031					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	within coordinates
Cpgi18946	CpG island 18946	597 bp proximal
Klk8	kallikrein related-peptidase 8	840 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	737 bp proximal
Rr646023	regulatory region 646023	851 bp proximal
Rr646024	regulatory region 646024	957 bp proximal
Tssr66051	transcription start site region 66051	807 bp upstream
Tssr66052	transcription start site region 66052	830 bp upstream
Tssr66053	transcription start site region 66053	1286 bp upstream
Tssr72173	transcription start site region 72173	770 bp downstream