rs16807032 SNP Detail

Summary

• ID
  rs16807032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                          CTTNNCATA
  NGATGATGGG AGCATTGATC TCTCTAGAGC CCCCAGGTGA ATCANAATAA ACCATAGGAA
  M
  GATCACTTCC TGTCGCCTGT AATGTGGNNN NNNNNNNNCG CACAGGTTGG GAGGAAAGGN
  TAAATGAACG AACCTGCTCC NGCCGANCCT CTGCAACCTT AACAACAAGC TTATTGCAGC
  ACCTTGGGAC TTCAGCCAGG GCTGGTCCCG CCGCCCTGGG AGGAAGGGGA AACCAGGTTA
  CAGCGCCACC CTAACCTGCC TACCCAGATG CCCCGGGCTG GTTCCTGACC CGCCCTCAAA
  GTCCCCAACC AGNACGATCA CTTCCTGTCG CCTGTAATGT GGNNNNNNNN NNNCGCACAG
  GTTGGGAGGA AAGGNTAAAT GAACGAACCT GCTCCNGCCG ANCCTCTGCA ACCTTAACAA
  CAAGCTTATT GCAGCACCTT GGGACTTCAG CCAGGGCTGG TCCCGCCGCC CTGGGAGGAA
  GGGGAAACCA GGTTACAGCG CCACCCTAAC CTGCCTACCC AGATGCCCCG GGCTGGTTCC
  TGACCCGCCC TCAAAGTCCC CAACCAGNAC CTCGGGTCCA GGCTTG               
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761908	Prss19_JC9448_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807032					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	within coordinates
Cpgi18946	CpG island 18946	581 bp proximal
Klk8	kallikrein related-peptidase 8	824 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	721 bp proximal
Rr646023	regulatory region 646023	835 bp proximal
Rr646024	regulatory region 646024	941 bp proximal
Tssr66051	transcription start site region 66051	791 bp upstream
Tssr66052	transcription start site region 66052	814 bp upstream
Tssr66053	transcription start site region 66053	1270 bp upstream
Tssr72173	transcription start site region 72173	754 bp downstream