rs16807045 SNP Detail

Summary

• ID
  rs16807045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAATAAA CCATAGGAAC GATCACTTCC TGTCGCCTGT
  AATGTGGGAT ACAGGGTGCG CACAGGTTGG GAGGAAAGGG TAAATGAACG AACCTGCTCC
  R
  GCCGAACCTC TGCAACCTTA ACAACAAGCT TATTGCAGCA CCTTGGGACT TCAGCCAGGG
  CTGGTCCCGC CGCCCTGGGA GGAAGGGGAA ACCAGGTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761921	Prss19_JC9448_15	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807045					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	within coordinates
Cpgi18946	CpG island 18946	500 bp proximal
Klk8	kallikrein related-peptidase 8	743 bp upstream
Klk9	kallikrein related-peptidase 9	77 bp downstream
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	640 bp proximal
Rr646023	regulatory region 646023	754 bp proximal
Rr646024	regulatory region 646024	860 bp proximal
Tssr66051	transcription start site region 66051	710 bp upstream
Tssr66052	transcription start site region 66052	733 bp upstream
Tssr66053	transcription start site region 66053	1189 bp upstream
Tssr72173	transcription start site region 72173	673 bp downstream