rs16807047 SNP Detail

Summary

• ID
  rs16807047
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                           CT TNNCATANGA TGATGGGAGC
  ATTGATCTCT CTAGAGCCCC CAGGTGAATC ANAATAAACC ATAGGAANGA TCACTTCCTG
  TCGCCTGTAA TGTGGNNNNN NNNNNNCGCA CAGGTTGGGA GGAAAGGNTA AATGAACGAA
  CCTGCTCCNG CCGANCCTCT GCAACCTTAA CAACAAGCTT ATTGCAGCAC CTTGGGACTT
  CAGCCAGGGC TGGTCCCGCC GCCCTGGGAG GAAGGGGAAA CCAGGTTACA GCGCCACCCT
  AACCTGCCTA CCCAGATGCC CCGGGCTGGT TCCTGACCCG CCCTCAAAGT CCCCAACCAG
  M
  ACACCGCCTT TCCCAATTTT CACAAAATTC AGTTTCAAGC CCNTCCTTCA TTAAGGACAG
  AGAACTTAAT NCCAGCCCCC TGCTTCTTCA GANCNTGCAG AACANNCNAG TCCTTCTTCA
  GATTCAACCT CCACCCTCCA ACTCCGAAGT CTAAATCAGA GCTCCTCCCT TAAATCCAGG
  GGTTCAGATG AGGTATTCAA ACCCCAACTC ACTTCCCTCG GACTCGGGGA TTCAAGCTTT
  CACTTTTCTC CCTCAGACTC GGGTCCAGGC TTG                             
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761923	Prss19_JC9448_17	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807047					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	164 bp distal
Cpgi18946	CpG island 18946	328 bp proximal
Klk8	kallikrein related-peptidase 8	571 bp upstream
Klk9	kallikrein related-peptidase 9	249 bp downstream
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	468 bp proximal
Rr646023	regulatory region 646023	582 bp proximal
Rr646024	regulatory region 646024	688 bp proximal
Tssr66051	transcription start site region 66051	538 bp upstream
Tssr66052	transcription start site region 66052	561 bp upstream
Tssr66053	transcription start site region 66053	1017 bp upstream
Tssr72173	transcription start site region 72173	501 bp downstream