rs16807049 SNP Detail

Summary

• ID
  rs16807049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGACTTC AGCCAGGGCT
  GGTCCCGCCG CCCTGGGAGG AAGGGGAAAC CAGGTTACAG CGCCACCCTA ACCTGCCTAC
  CCAGATGCCC CGGGCTGGTT CCTGACCCGC CCTCAAAGTC CCCAACCAGA ACACCGCCTT
  TCCCAATTTT CACAAAATTC AGTTTCAAGC CCATCCTTCA TTAAGGACAG AGAACTTAAT
  Y
  CCAGCCCCCT GCTTCTTCAG ACCCTGCAGA ACACCCCAGT CCTTCTTCAG ATTCAACCTC
  CACCCTCCAA CTCCGAAGTC TAAATCAGAG CTCCTCCCTT AAATCCAGGG GTTCAGATGA
  GGTATTCAAA CCCCAACTCA CTTCCCTCGG ACTCGGGGAT TCAAGCTTTC ACTTTTCTCC
  CTCAGACTCG GGTCCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761925	Prss19_JC9448_19	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807049					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	235 bp distal
Cpgi18946	CpG island 18946	257 bp proximal
Klk8	kallikrein related-peptidase 8	500 bp upstream
Klk9	kallikrein related-peptidase 9	320 bp downstream
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	397 bp proximal
Rr646023	regulatory region 646023	511 bp proximal
Rr646024	regulatory region 646024	617 bp proximal
Tssr66051	transcription start site region 66051	467 bp upstream
Tssr66052	transcription start site region 66052	490 bp upstream
Tssr66053	transcription start site region 66053	946 bp upstream
Tssr72173	transcription start site region 72173	430 bp downstream