rs16807054 SNP Detail

Summary

• ID
  rs16807054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGGGA AACCAGGTTA
  CAGCGCCACC CTAACCTGCC TACCCAGATG CCCCGGGCTG GTTCCTGACC CGCCCTCAAA
  GTCCCCAACC AGAACACCGC CTTTCCCAAT TTTCACAAAA TTCAGTTTCA AGCCCATCCT
  TCATTAAGGA CAGAGAACTT AATTCCAGCC CCCTGCTTCT TCAGACCCTG CAGAACACCC
  Y
  AGTCCTTCTT CAGATTCAAC CTCCACCCTC CAACTCCGAA GTCTAAATCA GAGCTCCTCC
  CTTAAATCCA GGGGTTCAGA TGAGGTATTC AAACCCCAAC TCACTTCCCT CGGACTCGGG
  GATTCAAGCT TTCACTTTTC TCCCTCAGAC TCGGGTCCAG GCTTTGTTCC TTCTCTCTCA
  GACCAAGATA TCCAAATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761930	Prss19_JC9448_24	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807054					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	272 bp distal
Cpgi18946	CpG island 18946	220 bp proximal
Klk8	kallikrein related-peptidase 8	463 bp upstream
Klk9	kallikrein related-peptidase 9	357 bp downstream
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	360 bp proximal
Rr646023	regulatory region 646023	474 bp proximal
Rr646024	regulatory region 646024	580 bp proximal
Tssr66051	transcription start site region 66051	430 bp upstream
Tssr66052	transcription start site region 66052	453 bp upstream
Tssr66053	transcription start site region 66053	909 bp upstream
Tssr72173	transcription start site region 72173	393 bp downstream