rs16807060 SNP Detail

Summary

• ID
  rs16807060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43446817 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                    GAGA TTGGAGAGAA
  AGATCTGAGG CTGTGACTCC AACGTCCTGG GGAAGAGGGA GCTTAAGAGA CCCGCTTGAA
  GATCCTGAGA GAAAGAATGT GAGCCTGGGG GTGGGAGGGT CCTGGGCTCA GAGAANGGGG
  ACCTCCCTGC GCCTGAGGTC CGTGTCTGGG NACCTCTGCG CCTCACCTTC CAGAATGCAA
  GGGGCGGGGT CACTCGGACT CGGTGGAAGA GGCCCCCGGA CTTCCCTTCG GTGTGTCGGG
  TACAAGATTT TGCAGCCTTT TAACGAGGAA GCCCCGCCCA CGGCCCCGCC TTCTGCCCGC
  ACCTTGCTGC GGTGCGGCTG NACCCGCAAG CGCTCGAGGA GGGGCACGGN CTGGAGTGAC
  TTTAGGAGGA GGGNCTGGAG CCTCGGAAAC CGAGGTGAGG ACTAGAGGGG CAGTGCACCG
  R
  CCCCCGGGGT AGAACGGAAG AGATGGGTCG GAGGGAGGCA ACTGGAACCT GGGCTCGTGG
  GCCTGATGGA GGAGGGCTGG TATTTGGATA TCTTGGTCTG AGAGAGAAGG AACAAAGCCT
  GGACCCGAGT CTGAGGGAGA AAAGTGAAAG CTTGATT                         
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761936	Prss19_JC9449_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807060					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43446817 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	551 bp distal
Cpgi18946	CpG island 18946	within coordinates
Klk8	kallikrein related-peptidase 8	184 bp upstream
Klk9	kallikrein related-peptidase 9	636 bp downstream
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	81 bp proximal
Rr646023	regulatory region 646023	195 bp proximal
Rr646024	regulatory region 646024	301 bp proximal
Tssr66051	transcription start site region 66051	151 bp upstream
Tssr66052	transcription start site region 66052	174 bp upstream
Tssr66053	transcription start site region 66053	630 bp upstream
Tssr72173	transcription start site region 72173	114 bp downstream