rs16807061 SNP Detail

Summary

• ID
  rs16807061
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCCTTC CCCCAGTTCC
  CCAGACAACA AGATCTCAGG CTCCTCCCTC GGACTTCCTC TTAGTTCCAC CCTCTTCCTC
  AGAGGCCACC ATGGGACGCC CCCCACCCTG TGCAATCCAG CCGTGGATCC TTCTGCTTCT
  GTTCATGGGA GCGTGGGCAG GTGAGAGGAA CAGGTCCCAC CACCCAGGGC CTTCAGTGGG
  K
  TAGGGGTTAC TGGACTCTGA GTGAGTTCCT TCTGACACGT GGGTGTGTGG GTGCCTGTGG
  TGGGCTTGGG GACCGGGGAG CTTTCTTGGT AGCGAGTAGA GATAGCAACT CAGTGGTGAG
  GAAGTGGGTT GAGTTTCCCA TAGATGCATG GCTGCGGAAG AGATTCTTAT TGCCTGTCAG
  ACAAAGCTGA ATTTGGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761937	Prss19_JC9450_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807061					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1331 bp distal
Cpgi18946	CpG island 18946	456 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1416 bp downstream
Rr646021	regulatory region 646021	700 bp distal
Rr646022	regulatory region 646022	586 bp distal
Rr646023	regulatory region 646023	480 bp distal
Rr646024	regulatory region 646024	within coordinates
Tssr66051	transcription start site region 66051	607 bp downstream
Tssr66052	transcription start site region 66052	587 bp downstream
Tssr66053	transcription start site region 66053	77 bp downstream
Tssr72173	transcription start site region 72173	640 bp upstream