rs16807064 SNP Detail

Summary

• ID
  rs16807064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACGCCCC CCACCCTGTG
  CAATCCAGCC GTGGATCCTT CTGCTTCTGT TCATGGGAGC GTGGGCAGGT GAGAGGAACA
  GGTCCCACCA CCCAGGGCCT TCAGTGGGGT AGGGGTTACT GGACTCTGAG TGAGTTCCTT
  CTGACACGTG GGTGTGTGGG TGCCTGTGGT GGGCTTGGGG ACCGGGGAGC TTTCTTGGTA
  K
  CGAGTAGAGA TAGCAACTCA GTGGTGAGGA AGTGGGTTGA GTTTCCCATA GATGCATGGC
  TGCGGAAGAG ATTCTTATTG CCTGTCAGAC AAAGCTGAAT TTGGTGTGGG GATGTCTAGA
  ACTCGTGTAG ACGTGCGTGG AAGCATGGTG AGGGCTGTGC CTAGTGTTGA TTATTCTCAG
  GTCTCAGTGA ACTTACATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761940	Prss19_JC9450_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807064					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1423 bp distal
Cpgi18946	CpG island 18946	548 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1508 bp downstream
Rr646021	regulatory region 646021	792 bp distal
Rr646022	regulatory region 646022	678 bp distal
Rr646023	regulatory region 646023	572 bp distal
Rr646024	regulatory region 646024	within coordinates
Tssr66051	transcription start site region 66051	699 bp downstream
Tssr66052	transcription start site region 66052	679 bp downstream
Tssr66053	transcription start site region 66053	169 bp downstream
Tssr72173	transcription start site region 72173	732 bp upstream