rs16807065 SNP Detail

Summary

• ID
  rs16807065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGCGT GGGCAGGTGA
  GAGGAACAGG TCCCACCACC CAGGGCCTTC AGTGGGGTAG GGGTTACTGG ACTCTGAGTG
  AGTTCCTTCT GACACGTGGG TGTGTGGGTG CCTGTGGTGG GCTTGGGGAC CGGGGAGCTT
  TCTTGGTAGC GAGTAGAGAT AGCAACTCAG TGGTGAGGAA GTGGGTTGAG TTTCCCATAG
  R
  TGCATGGCTG CGGAAGAGAT TCTTATTGCC TGTCAGACAA AGCTGAATTT GGTGTGGGGA
  TGTCTAGAAC TCGTGTAGAC GTGCGTGGAA GCATGGTGAG GGCTGTGCCT AGTGTTGATT
  ATTCTCAGGT CTCAGTGAAC TTACATGTGG CCATGTTCCA ATGGATGCTG GAAACTTATC
  TGTTGAAGGC ATAAGAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24761941	Prss19_JC9450_5	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A		A	A	A	A	A	A			A	G		A		A	A		A		A	G
ss61001488	NES16126189	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A		A		A	A		A	A			G		A			A		A			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16807065					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001488	NES16126189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1475 bp distal
Cpgi18946	CpG island 18946	600 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1560 bp downstream
Rr646021	regulatory region 646021	844 bp distal
Rr646022	regulatory region 646022	730 bp distal
Rr646023	regulatory region 646023	624 bp distal
Rr646024	regulatory region 646024	within coordinates
Tssr66051	transcription start site region 66051	751 bp downstream
Tssr66052	transcription start site region 66052	731 bp downstream
Tssr66053	transcription start site region 66053	221 bp downstream
Tssr72173	transcription start site region 72173	784 bp upstream