rs16807068 SNP Detail

Summary

• ID
  rs16807068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCGAGTA GAGATAGCAA CTCAGTGGTG AGGAAGTGGG
  TTGAGTTTCC CATAGATGCA TGGCTGCGGA AGAGATTCTT ATTGCCTGTC AGACAAAGCT
  R
  AATTTGGTGT GGGGATGTCT AGAACTCGTG TAGACGTGCG TGGAAGCATG GTGAGGGCTG
  TGCCTAGTGT TGATTATTCT CAGGTCTCAG TGAACTTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24761944	Prss19_JC9450_8	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G	G	G	A	G			G	G		G		G	A		G		G	G
ss61001487	NES16126190	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G		G		G	A		G	G			G		G			A		G			G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16807068					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001487	NES16126190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1520 bp distal
Cpgi18946	CpG island 18946	645 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1605 bp downstream
Rr646021	regulatory region 646021	889 bp distal
Rr646022	regulatory region 646022	775 bp distal
Rr646023	regulatory region 646023	669 bp distal
Rr646024	regulatory region 646024	45 bp distal
Tssr66051	transcription start site region 66051	796 bp downstream
Tssr66052	transcription start site region 66052	776 bp downstream
Tssr66053	transcription start site region 66053	266 bp downstream
Tssr72173	transcription start site region 72173	829 bp upstream