rs16807069 SNP Detail

Summary

• ID
  rs16807069
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGTGCC TGTGGTGGGC
  TTGGGGACCG GGGAGCTTTC TTGGTAGCGA GTAGAGATAG CAACTCAGTG GTGAGGAAGT
  GGGTTGAGTT TCCCATAGAT GCATGGCTGC GGAAGAGATT CTTATTGCCT GTCAGACAAA
  GCTGAATTTG GTGTGGGGAT GTCTAGAACT CGTGTAGACG TGCGTGGAAG CATGGTGAGG
  D
  CTGTGCCTAG TGTTGATTAT TCTCAGGTCT CAGTGAACTT ACATGTGGCC ATGTTCCAAT
  GGATGCTGGA AACTTATCTG TTGAAGGCAT AAGAGACGGT CCGCAGAGGA ACTGGCCTGT
  GTGTCCATTT GAACCCACAG TGGCTTTCCT GGCTGGGGCT CTGACATCGA GGGTGGCGAC
  CCACCCTTCT CCTTCCTGAT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761945	Prss19_JC9451_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807069					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1577 bp distal
Cpgi18946	CpG island 18946	702 bp distal
Klk8	kallikrein related-peptidase 8	Intron
Klk9	kallikrein related-peptidase 9	1662 bp downstream
Rr646021	regulatory region 646021	946 bp distal
Rr646022	regulatory region 646022	832 bp distal
Rr646023	regulatory region 646023	726 bp distal
Rr646024	regulatory region 646024	102 bp distal
Tssr66051	transcription start site region 66051	853 bp downstream
Tssr66052	transcription start site region 66052	833 bp downstream
Tssr66053	transcription start site region 66053	323 bp downstream
Tssr72173	transcription start site region 72173	886 bp upstream