rs16807070 SNP Detail

Summary

• ID
  rs16807070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTGTAGA CGTGCGTGGA
  AGCATGGTGA GGGCTGTGCC TAGTGTTGAT TATTCTCAGG TCTCAGTGAA CTTACATGTG
  GCCATGTTCC AATGGATGCT GGAAACTTAT CTGTTGAAGG CATAAGAGAC GGTCCGCAGA
  GGAACTGGCC TGTGTGTCCA TTTGAACCCA CAGTGGCTTT CCTGGCTGGG GCTCTGACAT
  Y
  GAGGGTGGCG ACCCACCCTT CTCCTTCCTG ATGCAGGGCT CACCAGAGCT CAGGGCTCCA
  AGATCCTGGA AGGTCGAGAG TGTATACCCC ACTCCCAGCC TTGGCAGGCA GCCTTGTTCC
  AGGGCGAGAG ACTGATCTGT GGGGGTGTCC TGGTTGGAGA CAGATGGGTC CTCACGGCAG
  CCCACTGCAA AAAACAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761946	Prss19_JC9451_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807070					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1745 bp distal
Cpgi18946	CpG island 18946	870 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1830 bp downstream
Rr646021	regulatory region 646021	1114 bp distal
Rr646022	regulatory region 646022	1000 bp distal
Rr646023	regulatory region 646023	894 bp distal
Rr646024	regulatory region 646024	270 bp distal
Tssr66051	transcription start site region 66051	1021 bp downstream
Tssr66052	transcription start site region 66052	1001 bp downstream
Tssr66053	transcription start site region 66053	491 bp downstream
Tssr72173	transcription start site region 72173	1054 bp upstream