rs16807077 SNP Detail

Summary

• ID
  rs16807077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGCACA TGTGGGTGGA
  CCTGGAGGGA AGAGGCTCAG GGCTCTGTTT GAGGAAGAGG AGGAAGTTAA AACTTGGGTC
  TGAGGGAGGA GGGCTAAGGA GGACTGCTGG ATCTGAGGCA GACAGGCTAG GGCCTGGACT
  CCTGGGCTTG GTGGAAGATG AATGGGTTCT GAGGGAGAAG GAGTGGAAAG AACCCCCAAG
  Y
  ACCCCCAACT TCCTTCTGGG TTCCAAGATC CACCCTCACT CCTCACCCCC TCCACCCCTC
  CTTGTGCAGG AAGTACTCCG TGCGTCTGGG TGATCATAGC CTCCAGAGCA GAGATCAGCC
  GGAGCAGGAG ATCCAGGTGG CTCAGTCTAT CCAGCATCCT TGCTACAACA ACAGCAACCC
  AGAAGATCAC AGTCACGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761953	Prss19_JC9452_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807077					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1278 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646021	regulatory region 646021	1522 bp distal
Rr646022	regulatory region 646022	1408 bp distal
Rr646023	regulatory region 646023	1302 bp distal
Rr646024	regulatory region 646024	678 bp distal
Tssr66051	transcription start site region 66051	1429 bp downstream
Tssr66052	transcription start site region 66052	1409 bp downstream
Tssr66053	transcription start site region 66053	899 bp downstream
Tssr72173	transcription start site region 72173	1462 bp upstream