rs16807079 SNP Detail

Summary

• ID
  rs16807079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCAAGA TCCACCCTCA
  CTCCTCACCC CCTCCACCCC TCCTTGTGCA GGAAGTACTC CGTGCGTCTG GGTGATCATA
  GCCTCCAGAG CAGAGATCAG CCGGAGCAGG AGATCCAGGT GGCTCAGTCT ATCCAGCATC
  CTTGCTACAA CAACAGCAAC CCAGAAGATC ACAGTCACGA TATAATGCTC ATTCGACTGC
  R
  GAACTCAGCA AACCTCGGGG ACAAGGTGAA GCCGGTCCAA CTGGCCAATC TGTGTCCCAA
  AGTTGGCCAG AAGTGCATCA TATCAGGCTG GGGCACTGTC ACCAGCCCTC AAGGTAAAGA
  GCTGGGCCCC CTACCTAAGA GGGTGAAGAG AAGGCAATCA CCCCAGTGGA CCCCAAGCCA
  TTGCAGACCT CATTCCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24761955	Prss19_JC9452_6	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A		A	A	A	G	A	A			A	G		A		A	A		A		A	A
ss61001485	NES16126192	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A		A		G	A		A	A			G		A			A		A			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16807079					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001485	NES16126192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1497 bp distal
Klk8	kallikrein related-peptidase 8	Coding-NonSynonymous
Rr646021	regulatory region 646021	1741 bp distal
Rr646022	regulatory region 646022	1627 bp distal
Rr646023	regulatory region 646023	1521 bp distal
Rr646024	regulatory region 646024	897 bp distal
Tssr66051	transcription start site region 66051	1648 bp downstream
Tssr66052	transcription start site region 66052	1628 bp downstream
Tssr66053	transcription start site region 66053	1118 bp downstream
Tssr72173	transcription start site region 72173	1681 bp upstream