rs16807080 SNP Detail

Summary

• ID
  rs16807080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCGTGCG TCTGGGTGAT
  CATAGCCTCC AGAGCAGAGA TCAGCCGGAG CAGGAGATCC AGGTGGCTCA GTCTATCCAG
  CATCCTTGCT ACAACAACAG CAACCCAGAA GATCACAGTC ACGATATAAT GCTCATTCGA
  CTGCAGAACT CAGCAAACCT CGGGGACAAG GTGAAGCCGG TCCAACTGGC CAATCTGTGT
  Y
  CCAAAGTTGG CCAGAAGTGC ATCATATCAG GCTGGGGCAC TGTCACCAGC CCTCAAGGTA
  AAGAGCTGGG CCCCCTACCT AAGAGGGTGA AGAGAAGGCA ATCACCCCAG TGGACCCCAA
  GCCATTGCAG ACCTCATTCC CCAACATACC CTGACCTCCA TACACCCTAA GAGAAGATAA
  TGAAAGAGAA AAGTGAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761956	Prss19_JC9452_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807080					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1553 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646021	regulatory region 646021	1797 bp distal
Rr646022	regulatory region 646022	1683 bp distal
Rr646023	regulatory region 646023	1577 bp distal
Rr646024	regulatory region 646024	953 bp distal
Tssr66051	transcription start site region 66051	1704 bp downstream
Tssr66052	transcription start site region 66052	1684 bp downstream
Tssr66053	transcription start site region 66053	1174 bp downstream
Tssr72173	transcription start site region 72173	1737 bp upstream