rs16807083 SNP Detail

Summary

• ID
  rs16807083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGGACA AGGTGAAGCC
  GGTCCAACTG GCCAATCTGT GTCCCAAAGT TGGCCAGAAG TGCATCATAT CAGGCTGGGG
  CACTGTCACC AGCCCTCAAG GTAAAGAGCT GGGCCCCCTA CCTAAGAGGG TGAAGAGAAG
  GCAATCACCC CAGTGGACCC CAAGCCATTG CAGACCTCAT TCCCCAACAT ACCCTGACCT
  M
  CATACACCCT AAGAGAAGAT AATGAAAGAG AAAAGTGAGC ACATTAAGTG TTATGGGGAA
  GGGGAGGGGG ACTGTAAGTA AAGTGCTTGC TTAGCAAGTG TGAGGGGCTT TGAGTTCAGA
  TCCCCAGCAA CCTTGTTAAA GCCAGCTGTG AGGTGGAGAC AGGAGGGTTC CAGGGTTTGT
  CAGTCAACCA TCGTAGCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24761959	Prss19_JC9452_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807083					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1711 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646021	regulatory region 646021	1955 bp distal
Rr646022	regulatory region 646022	1841 bp distal
Rr646023	regulatory region 646023	1735 bp distal
Rr646024	regulatory region 646024	1111 bp distal
Tssr66051	transcription start site region 66051	1862 bp downstream
Tssr66052	transcription start site region 66052	1842 bp downstream
Tssr66053	transcription start site region 66053	1332 bp downstream
Tssr72173	transcription start site region 72173	1895 bp upstream