rs16807162 SNP Detail

Summary

• ID
  rs16807162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43425857 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAATC ACTTTAAGAG GCGATCAGAA
  Y
  GCTGGCTTTT GGGTTTTCTT CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24762038	Prss20-pending_JC9462_1	ROCHEBIO	RPAMM	f	SNP	T			T	T	T	T	T	T		T	T	T	C	C	T			C		T		T	C			T
ss46094343	mCV23832671	ABI	CRAMUS_MOUSE	r	SNP			G		A								A		G
ss61001518	NES16126566	PERLEGEN	MM_PANEL2	r	SNP		A			A	A		A		A		A			G		A	A		G		A			G	G		A
ss149083642	ENSMUSSNP6754840	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		A										G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16807162					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	C	C	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001518	NES16126566	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43425857 () rs orientation: reverse

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66041	transcription start site region 66041	1811 bp downstream
Tssr66042	transcription start site region 66042	1797 bp downstream
Tssr66043	transcription start site region 66043	1785 bp downstream
Tssr66044	transcription start site region 66044	1769 bp downstream
Tssr66045	transcription start site region 66045	135 bp downstream