rs16807230 SNP Detail

Summary

• ID
  rs16807230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43426662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGCAGCA GTGGGTGGAG GGGTTGGGGA TGGTGTGGTG
  TTAGCATGGA TGATCAGACT GGAGAGGGTA AAGTAGCATT AGTGTGTATG ACGGAGGCCT
  R
  GTTGGTATGA AGATAGAGGG TTTGGGGATG GAGTGGCATT AGTTTGTATG ATGGGGATCT
  AGTTGAGTTG ATGACAAAGG AATGAGGTGG TCTTAGAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24762106	Prss20-pending_JC9466_1	ROCHEBIO	RPAMM	f	SNP	G			G	G	G	G	G	G		G	G	G	A		G			G	A		G		G	A		G		G	A
ss45996506	mCV23832682	ABI	CRAMUS_MOUSE	f	SNP			A										G		A
ss61001514	NES16126514	PERLEGEN	MM_PANEL2	f	SNP		G			G	G		G		G		G		A	A		G	G			A		G			A		A			G
ss149083657	ENSMUSSNP605877	ENSEMBL	ENSEMBL_Sanger	f	SNP			A												A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16807230					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	A	G	G	G	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001514	NES16126514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43426662 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66045	transcription start site region 66045	940 bp downstream