rs16807233 SNP Detail

Summary

• ID
  rs16807233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43426798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTAGCA TGGATGATCA
  GACTGGAGAG GGTAAAGTAG CATTAGTGTG TATGACGGAG GCCTGGTTGG TATGAAGATA
  GAGGGTTTGG GGATGGAGTG GCATTAGTTT GTATGATGGG GATCTAGTTG AGTTGATGAC
  AAAGGAATGA GGTGGTCTTA GAATAGATGA TGGCCTTAGT CAGGATGAGG ATGAAGGAGC
  R
  AGTGATGGTA GATGGGTCTG GGTGTTCACA AGGCACAATT CATCATCTCT CCCTCCCCAC
  CCCTGCCCTG TCCCCCTACC TTTCTACCTC TGACCACATC TCTCCCACCT CAGCCATTAC
  GTGATCCTCC TTGGAGAGCA CAATCTAGAG AAGACAGACG GCTGTGAGCA GAGGCGGATG
  GCCACTGAGT CCTTCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762109	Prss20-pending_JC9466_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807233					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43426798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klk11	kallikrein related-peptidase 11			Intron
				Noncoding-Transcript-Variant
Tssr66045	transcription start site region 66045			1076 bp downstream