rs16807238 SNP Detail

Summary

• ID
  rs16807238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43427005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGATGGG TCTGGGTGTT
  CACAAGGCAC AATTCATCAT CTCTCCCTCC CCACCCCTGC CCTGTCCCCC TACCTTTCTA
  CCTCTGACCA CATCTCTCCC ACCTCAGCCA TTACGTGATC CTCCTTGGAG AGCACAATCT
  AGAGAAGACA GACGGCTGTG AGCAGAGGCG GATGGCCACT GAGTCCTTCC CCCACCCCGA
  Y
  TTCAACAACA GCCTCCCCAA CAAAGACCAC CGGAATGACA TAATGCTTGT GAAGATGTCG
  TCTCCCGTCT TCTTTACCCG AGCTGTGCAG CCACTCACCC TGTCCCCACA CTGTGTCGCT
  GCAGGCACCA GCTGCCTCAT TTCTGGATGG GGCACCACGT CCAGCCCCCA GTGTAGGGGC
  TCCTGAGGGA ACCGTGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762114	Prss20-pending_JC9466_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16807238					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43427005 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66045	transcription start site region 66045	1283 bp downstream