rs16808071 SNP Detail

Summary

• ID
  rs16808071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28225243 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTAGT CTCTAGGAAA GCCAGAGGTA
  Y
  TCAAAACCTT GGGCCACTTT CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762978	Wnt5a_JC9647_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808071					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28225243 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	1370 bp proximal
Rr406804	regulatory region 406804	751 bp distal
Rr407283	regulatory region 407283	1597 bp distal
Rr489627	regulatory region 489627	1364 bp distal
Rr489628	regulatory region 489628	974 bp proximal
Rr489629	regulatory region 489629	1771 bp proximal
Rr489630	regulatory region 489630	1961 bp proximal
Tssr124778	transcription start site region 124778	1279 bp upstream
Tssr124779	transcription start site region 124779	1348 bp upstream
Tssr124780	transcription start site region 124780	1392 bp upstream
Tssr124781	transcription start site region 124781	1450 bp upstream
Tssr124782	transcription start site region 124782	1510 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	1464 bp upstream