rs16808072 SNP Detail

Summary

• ID
  rs16808072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28225837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTGTAT GTGGTATGTG
  TACATGTATG TGTGTAGGGT GTATGTGGTA TGTAGGGGGT GGGGAGTGGC AGTGTGTGTT
  TGTAGTGTGT GTAGTGGTGT GTGTGTGTGT GTCTGTGTGT GTCTGTGTGT GTGTTTACCT
  TCTACCCTTG AACGTTGGAA GATGGGAAAG ATGGAGAAAA GAATTGCACT AACCCATGAG
  R
  CATTGTTTGA GCATGCCACC TGTGGCATAC CGGAGGATAG GGTGGTGCTT ATCCATCCAC
  TCTATCCAAT CGAAGTCCTA ACAATTTCAG CTATCTAGAG GTGTCTAGAA GTTCTGGAGT
  CTGGATCCCC GGTTCACCTA AACTTCACAG TCTTCTCACC CTGAGAGCCA CCACCTAGAT
  CCATATCGGC AGCATGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762979	Wnt5a_JC9648_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808072					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28225837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	776 bp proximal
Rr406804	regulatory region 406804	1345 bp distal
Tssr124778	transcription start site region 124778	685 bp upstream
Tssr124779	transcription start site region 124779	754 bp upstream
Tssr124780	transcription start site region 124780	798 bp upstream
Tssr124781	transcription start site region 124781	856 bp upstream
Tssr124782	transcription start site region 124782	916 bp upstream
Tssr124783	transcription start site region 124783	1583 bp upstream
Tssr124784	transcription start site region 124784	1615 bp upstream
Tssr124785	transcription start site region 124785	1662 bp upstream
Tssr124786	transcription start site region 124786	1726 bp upstream
Tssr124787	transcription start site region 124787	1879 bp upstream
Tssr124788	transcription start site region 124788	1901 bp upstream
Tssr124789	transcription start site region 124789	1937 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	870 bp upstream