rs16808073 SNP Detail

Summary

• ID
  rs16808073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28225869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGGTGT ATGTGGTATG
  TAGGGGGTGG GGAGTGGCAG TGTGTGTTTG TAGTGTGTGT AGTGGTGTGT GTGTGTGTGT
  CTGTGTGTGT CTGTGTGTGT GTTTACCTTC TACCCTTGAA CGTTGGAAGA TGGGAAAGAT
  GGAGAAAAGA ATTGCACTAA CCCATGAGAC ATTGTTTGAG CATGCCACCT GTGGCATACC
  R
  GAGGATAGGG TGGTGCTTAT CCATCCACTC TATCCAATCG AAGTCCTAAC AATTTCAGCT
  ATCTAGAGGT GTCTAGAAGT TCTGGAGTCT GGATCCCCGG TTCACCTAAA CTTCACAGTC
  TTCTCACCCT GAGAGCCACC ACCTAGATCC ATATCGGCAG CATGACCTCT ACTCTTGCCT
  GGCCACGTTG GGGTGAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762980	Wnt5a_JC9648_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808073					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28225869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	744 bp proximal
Rr406804	regulatory region 406804	1377 bp distal
Tssr124778	transcription start site region 124778	653 bp upstream
Tssr124779	transcription start site region 124779	722 bp upstream
Tssr124780	transcription start site region 124780	766 bp upstream
Tssr124781	transcription start site region 124781	824 bp upstream
Tssr124782	transcription start site region 124782	884 bp upstream
Tssr124783	transcription start site region 124783	1551 bp upstream
Tssr124784	transcription start site region 124784	1583 bp upstream
Tssr124785	transcription start site region 124785	1630 bp upstream
Tssr124786	transcription start site region 124786	1694 bp upstream
Tssr124787	transcription start site region 124787	1847 bp upstream
Tssr124788	transcription start site region 124788	1869 bp upstream
Tssr124789	transcription start site region 124789	1905 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	838 bp upstream