rs16808076 SNP Detail

Summary

• ID
  rs16808076
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATTTCA GCTATCTAGA
  GGTGTCTAGA AGTTCTGGAG TCTGGATCCC CGGTTCACCT AAACTTCACA GTCTTCTCAC
  CCTGAGAGCC ACCACCTAGA TCCATATCGG CAGCATGACC TCTACTCTTG CCTGGCCACG
  TTGGGGTGAG GAACAGTCCT GTCTAGCAAA CCTCTGACAC CAGGGACTTT GCAAGATGCA
  S
  GAGCCCACTC TACCCTCCAA GCCCGGGCTT TAAGCCCAGG GCGCAAGGAG ACATCCCAAC
  CCAACCAGGA TCCATGTCAG TGAGGTCCTT TCTGTAGAGG TGCCAGTAAA TGCAGTTGGG
  GACAGTTGAG CCAAGGGGTC CGGATCGGAA AGTTGAGGTT CAGACCCCCA AACGGGTCGA
  CGGCTTTGGA AGAAGCTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762983	Wnt5a_JC9648_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808076					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	496 bp proximal
Rr406804	regulatory region 406804	1625 bp distal
Rr489628	regulatory region 489628	100 bp proximal
Rr489629	regulatory region 489629	897 bp proximal
Rr489630	regulatory region 489630	1087 bp proximal
Tssr124778	transcription start site region 124778	405 bp upstream
Tssr124779	transcription start site region 124779	474 bp upstream
Tssr124780	transcription start site region 124780	518 bp upstream
Tssr124781	transcription start site region 124781	576 bp upstream
Tssr124782	transcription start site region 124782	636 bp upstream
Tssr124783	transcription start site region 124783	1303 bp upstream
Tssr124784	transcription start site region 124784	1335 bp upstream
Tssr124785	transcription start site region 124785	1382 bp upstream
Tssr124786	transcription start site region 124786	1446 bp upstream
Tssr124787	transcription start site region 124787	1599 bp upstream
Tssr124788	transcription start site region 124788	1621 bp upstream
Tssr124789	transcription start site region 124789	1657 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	mRNA-UTR