rs16808078 SNP Detail

Summary

• ID
  rs16808078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGTTCT GGAGTCTGGA
  TCCCCGGTTC ACCTAAACTT CACAGTCTTC TCACCCTGAG AGCCACCACC TAGATCCATA
  TCGGCAGCAT GACCTCTACT CTTGCCTGGC CACGTTGGGG TGAGGAACAG TCCTGTCTAG
  CAAACCTCTG ACACCAGGGA CTTTGCAAGA TGCACGAGCC CACTCTACCC TCCAAGCCCG
  R
  GCTTTAAGCC CAGGGCGCAA GGAGACATCC CAACCCAACC AGGATCCATG TCAGTGAGGT
  CCTTTCTGTA GAGGTGCCAG TAAATGCAGT TGGGGACAGT TGAGCCAAGG GGTCCGGATC
  GGAAAGTTGA GGTTCAGACC CCCAAACGGG TCGACGGCTT TGGAAGAAGC TGAGCCGATC
  AGGAGGCAGG CAGGCAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762985	Wnt5a_JC9648_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808078					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	470 bp proximal
Rr406804	regulatory region 406804	1651 bp distal
Rr489628	regulatory region 489628	74 bp proximal
Rr489629	regulatory region 489629	871 bp proximal
Rr489630	regulatory region 489630	1061 bp proximal
Tssr124778	transcription start site region 124778	379 bp upstream
Tssr124779	transcription start site region 124779	448 bp upstream
Tssr124780	transcription start site region 124780	492 bp upstream
Tssr124781	transcription start site region 124781	550 bp upstream
Tssr124782	transcription start site region 124782	610 bp upstream
Tssr124783	transcription start site region 124783	1277 bp upstream
Tssr124784	transcription start site region 124784	1309 bp upstream
Tssr124785	transcription start site region 124785	1356 bp upstream
Tssr124786	transcription start site region 124786	1420 bp upstream
Tssr124787	transcription start site region 124787	1573 bp upstream
Tssr124788	transcription start site region 124788	1595 bp upstream
Tssr124789	transcription start site region 124789	1631 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	564 bp upstream