rs16808081 SNP Detail

Summary

• ID
  rs16808081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                         TCTGTGTGT GTCTGTGTGT GTGTTTACCT TCTACCCTTG
  AACGTTGGAA GATGGGAAAG ATGGAGAAAA GAATTGCACT AACCCATGAG NCATTGTTTG
  AGCATGCCAC CTGTGGCATA CCNGAGGATA GGGTGGTGCT TATCCATCCA CTCTNTCCAA
  TCGAAGTCCT AACAATTTCA GCTATCTAGA GGTGTCTAGA AGTTCTGGAG TCTGGATCCC
  CNGGTTCACC TAAACTTCAC AGTCTTCTCA CCCTGATCTG TGTGTGTCTG TGTGTGTGTT
  TACCTTCTAC CCTTGAACGT TGGAAGATGG GAAAGATGGA GAAAAGAATT GCACTAACCC
  ATGAGNCATT GTTTGAGCAT GCCACCTGTG GCATACCNGA GGATAGGGTG GTGCTTATCC
  ATCCACTCTN TCCAATCGAA GTCCTAACAA TTTCAGCTAT CTAGAGGTGT CTAGAAGTTC
  TGGAGTCTGG ATCCCCNGGT TCACCTAAAC TTCACAGTCT TCTCACCCTG ATCCGGATCG
  R
  AAAGTTGGGG TTCAGANCCC CCAAACGGGT CGACGGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762988	Wnt5a_JC9648_10	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808081					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	348 bp proximal
Rr406804	regulatory region 406804	1773 bp distal
Tssr124778	transcription start site region 124778	257 bp upstream
Tssr124779	transcription start site region 124779	326 bp upstream
Tssr124780	transcription start site region 124780	370 bp upstream
Tssr124781	transcription start site region 124781	428 bp upstream
Tssr124782	transcription start site region 124782	488 bp upstream
Tssr124783	transcription start site region 124783	1155 bp upstream
Tssr124784	transcription start site region 124784	1187 bp upstream
Tssr124785	transcription start site region 124785	1234 bp upstream
Tssr124786	transcription start site region 124786	1298 bp upstream
Tssr124787	transcription start site region 124787	1451 bp upstream
Tssr124788	transcription start site region 124788	1473 bp upstream
Tssr124789	transcription start site region 124789	1509 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	442 bp upstream