rs16808082 SNP Detail

Summary

• ID
  rs16808082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226856 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCGAG GCTGCCCACC TCCTCGGTCG
  Y
  GGCCGGGGTC CGAGGGGCGG TCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762989	Wnt5a_JC9649_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808082					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226856 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Rr489628	regulatory region 489628	139 bp distal
Rr489629	regulatory region 489629	158 bp proximal
Rr489630	regulatory region 489630	348 bp proximal
Tssr124778	transcription start site region 124778	294 bp downstream
Tssr124779	transcription start site region 124779	243 bp downstream
Tssr124780	transcription start site region 124780	210 bp downstream
Tssr124781	transcription start site region 124781	137 bp downstream
Tssr124782	transcription start site region 124782	73 bp downstream
Tssr124783	transcription start site region 124783	564 bp upstream
Tssr124784	transcription start site region 124784	596 bp upstream
Tssr124785	transcription start site region 124785	643 bp upstream
Tssr124786	transcription start site region 124786	707 bp upstream
Tssr124787	transcription start site region 124787	860 bp upstream
Tssr124788	transcription start site region 124788	882 bp upstream
Tssr124789	transcription start site region 124789	918 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates