rs16808084 SNP Detail

Summary

• ID
  rs16808084
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226797 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTTCTTCGGG TTAACCTTCT
  TCTTTCCACC CCCCCGCCTT TCCAGAGAGA ACAGAGCGAG AGGACGGAGG GCGCAGAGCT
  CCGCGGTGGC GACTCAACTC CAGAGGTCCA TGGCGGCCGA GGCTGCCCAC CTCCTCGGTC
  GCGGCCGGGG TCCGAGGGGC GGTCGTGGGG CCCGGCGGAG GCCGCGGAAG GAGATGGCAA
  W
  GCAGCGGCCG CACAATCCGG ACTCCGGACG GCGGAGGCGG TGCCTCGGAG CCTGCAGCAA
  CTTTCCAAGC GATGCGGTGC CCCACAGACT GACTGGCCCA GCGAGGGGAC CGCGTGCCCC
  CCACCCCCGG CCCTCCTGAC CAGCTCCCTC ACTTTCGCCC TCCCTCTCTC CAGACTCCTC
  TTTCCCTTGG TGTTCTCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762991	Wnt5a_JC9649_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808084					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226797 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Rr489628	regulatory region 489628	80 bp distal
Rr489629	regulatory region 489629	217 bp proximal
Rr489630	regulatory region 489630	407 bp proximal
Tssr124778	transcription start site region 124778	235 bp downstream
Tssr124779	transcription start site region 124779	184 bp downstream
Tssr124780	transcription start site region 124780	151 bp downstream
Tssr124781	transcription start site region 124781	78 bp downstream
Tssr124782	transcription start site region 124782	14 bp downstream
Tssr124783	transcription start site region 124783	623 bp upstream
Tssr124784	transcription start site region 124784	655 bp upstream
Tssr124785	transcription start site region 124785	702 bp upstream
Tssr124786	transcription start site region 124786	766 bp upstream
Tssr124787	transcription start site region 124787	919 bp upstream
Tssr124788	transcription start site region 124788	941 bp upstream
Tssr124789	transcription start site region 124789	977 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates