rs16808086 SNP Detail

Summary

• ID
  rs16808086
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226401 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCAGCGAAAA AAAAATATTT
  TTAAAGTTGC AGAACCAAAC ACGGCTGGAG AGGCAAAGGG GGGTGGGGGG GGGAGAGAAA
  AAAAAAGTCA ACTTTGCCTA TGCGCATGCG TGATGAGGCT GTCCTATGAC AAACTTCTCA
  GGATTTTAAA GCTGTACTAC GGGACAGGGT GCCTGGAGGC GGGGTACGCT CCCCCTTGGG
  S
  CCCCTCCTCA AGGCTCCCCA TCCCCCAGGC ATCTGTATAA CGAGGTTCAT TTCACTGCTG
  TTGCCTGCCT GCCTCCTGAT CGGCTCAGCT TCTTCCAAAG CCGTCGACCC GTTTGGGGGT
  CTGAACCTCA ACTTTCCGAT CCGGACCCCT TGGCTCAACT GTCCCCAACT GCATTTACTG
  GCACCTCTAC AGAAAGGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762993	Wnt5a_JC9649_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808086					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226401 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	212 bp proximal
Rr406804	regulatory region 406804	1909 bp distal
Rr489628	regulatory region 489628	within coordinates
Rr489629	regulatory region 489629	613 bp proximal
Rr489630	regulatory region 489630	803 bp proximal
Tssr124778	transcription start site region 124778	121 bp upstream
Tssr124779	transcription start site region 124779	190 bp upstream
Tssr124780	transcription start site region 124780	234 bp upstream
Tssr124781	transcription start site region 124781	292 bp upstream
Tssr124782	transcription start site region 124782	352 bp upstream
Tssr124783	transcription start site region 124783	1019 bp upstream
Tssr124784	transcription start site region 124784	1051 bp upstream
Tssr124785	transcription start site region 124785	1098 bp upstream
Tssr124786	transcription start site region 124786	1162 bp upstream
Tssr124787	transcription start site region 124787	1315 bp upstream
Tssr124788	transcription start site region 124788	1337 bp upstream
Tssr124789	transcription start site region 124789	1373 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	306 bp upstream